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320.004, VU Genomische Datenanalyse, Irene Tiemann-Boege, 2026S

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You also analyzed the STAT3 gene using gnomAD. What is the number of missense SNVs observed in this gene?

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Check the point mutations found in the skin for STAT3 (COSMIC gene version: STAT3_ENST00000585517) in "Positive Data". What is the first mutation you can find? (Nucleotide substitution)?

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Of the different substitutions, which one is the most common one in the STAT3 gene (gene version STAT3_ENST00000585517 in COSMIC)? (mutation distribution – substitution)

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Which type of mutation is the most prominent one in the STAT3 gene (gene version: STAT3_ENST00000585517) according to the COSMIC database?

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The mutations affecting amino acid position 299 of STAT3 (Gene version: STAT3_ENST00000585517) in the COSMIC database can cause multiple different amino acid changes – Which of the listed ones below is one of them?

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You have investigated the STAT3 gene (version: STAT3_ENST00000585517) in the COSMIC database. What is (one of) the mutation(s) you find on a level of nucleotides at amino acid position 299?

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In the genotyping assay you designed in exercise 4, assume you have a sample that is A/G heterozygous and you are doing a digest with the enzyme you selected. How many fragments would you see on the gel?

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Use the enzyme you found for exercise 4 and perform a custom digest on NEBcutter. How many fragments are produced by the restriction enzyme if the enzyme cuts?

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Consider the enzyme you selected for exercise 4. The enzyme only cuts when R is a/an ... ?

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Consider the enzyme you selected for exercise 4. What is the recognition sequence of the enzyme?

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