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The script isolates the heat loss due to your chosen method by:
Computing for the given temperatures the rates of energy loss due to all methods of heat transfer and thus isolating the energy due to the particular method of interest.
computing an energy loss for the control cup, and subtracting this from the energy loss in the experimental cup.
computing the average energy loss for the control and experiment together.
computing an energy loss for the control cup, and adding this to the energy loss in the experimental cup.
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