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BMS2062 - Introduction to bioinformatics S2 2025

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In order to determine the sequence of amino

acids that make up a peptide, it must first be fragmented:

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You have identified a lead compound that greatly reduces the growth of melanoma cells in culture. You want to investigate how the drug changes the proteome of the melanoma. Which of the following quantitative proteomics experiments would you use?
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Which of the following statements is correct regarding post-translational modifications (PTM)?
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You have discovered a novel protein you believe may have kinase activity. To investigate this, you performed a comparative phosphoproteomics experiment where you have analysed control cells and cells lacking the new protein called Kinashase. Below is a summary of the results: 

Based on these results you can conclude that the protein Kinashase is likely:

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The Human Proteome Project:
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Specific Post translational modification (PTM) peptides can be enriched by which of the following methods?
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How does phage display contribute to reducing immunogenicity during the development of therapeutic antibodies?
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Which region of a mouse antibody is typically retained during humanisation to preserve antigen specificity?
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Why do protein therapeutics generally show fewer side effects than small molecule drugs?
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A patient with symptoms of mitochondrial disease presents to the emergency toom and the care team decide that an urgent diagnosis is needed. To this end, proteomics is employed using the patient peripheral blood mononuclear cells (PBMCs). The following volcano plot is obtained: 

The red dots represent components of the pyruvate dehydrogenase (PDH) complex that converts pyruvate into acetyl CoA while the green dots represent proteins of the ATP synthase that produces ATP for the cell. The physician A diagnoses the patient with PDH complex deficiency while physician B thinks that the patient has ATP synthase complex deficiency. Which physician is correct?

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