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MCB2011 - Molecular biology and the cell - S1 2025

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The researcher decides

to design a polymerase chain reaction (PCR) assay to screen HCM patients for

the

ACTC1

risk allele. To determine if a patient is homozygous for the

risk allele, homozygous for the reference allele, or heterozygous (i.e. carries

one copy of each allele), the assay must simultaneously amplify and measure the

presence of both alleles (risk and reference).

Which approach

would you recommend for the assay? (1 mark)

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The ecologists successfully

repeat the Sanger sequencing experiment and discover that the

AlpA

gene bears

recognisable sequence similarity to the human actin genes (e.g.

ACTB, ACTC1

)

and codes for a protein that is similar to actin in structure and function. 

Select the

correct statement: (1 mark)

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How does the

genome of the novel organism likely compare to the human genome? (1 mark)

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What is the most

likely classification of the novel organism? (1 mark)

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The ecologists

used a quantitative PCR (qPCR) assay to investigate the abundance of the novel

organism in several different ecological niches including hydrothermal vents,

deep-sea sediments and shallow coastal waters. The qPCR assay was performed

using a primer that specifically targeted a gene

carried by the novel organism.

Image failed to load

Examine the

qPCR results shown above. Which ecological niche (hydrothermal vents, deep-sea

sediments, shallow coastal waters) had the highest abundance of the novel

organism? Briefly explain how you reached this conclusion. (2-3 sentences) (2

marks)

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The researcher

conducted the GWAS using next-generation sequencing technology. Did the

researcher conduct whole genome sequencing or whole exome sequencing? Use the information

available above to justify your response. (2-3 sentences) (2 marks)

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The ACTC1

gene encodes an actin protein that is only expressed in cardiomyocytes (i.e.

cardiac muscle cells). The schematic below shows the histone modifications that

are present in the

ACTC1

promoter region in cardiomyocytes vs

fibroblasts (i.e. skin cells).

Image failed to load

Use the

information provided above to explain why the

ACTC1

gene is actively expressed in

cardiomyocytes but not fibroblasts. (2-3 sentences) (2 marks)

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Use the drop-down boxes to complete the following sentences: (0.5 marks each, 1 mark total)

In cardiomyocytes

the

ACTC1 gene is likely packaged in
.

In fibroblasts

the

ACTC1 gene is likely packaged in
.

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The ACTB

gene encodes an actin protein that is ubiquitously expressed in all human

cells. As shown in the schematic below, the promoter region of the

ACTB

gene is embedded within a CG island.

Image failed to load

The researcher

uses a specialised laboratory technique to examine DNA methylation in the

ACTB

promoter region. What do you hypothesise the researcher will find? (1 mark)

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The ACTB

and

ACTC1

genes are located on two different chromosomes as shown in the

image below. 

Image failed to load

Use the drop-down boxes to classify the chromosomes. (0.5 marks each, 1 mark total)

ACTB is located on

chromosome.

ACTC1 is located on

chromosome.

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